During my last post-doc i had work on small heat shock protien assembly using some nice tools for doing symmetrical restrained computational docking. Thus, as usual i try to produce some nice graphism, and here is a exemple of the HSP16.5 24mer respresented as cartoon ribbon fitted in the molecular shape computed in the molsoft icm package.
mercredi 25 juin 2008
small heat-shock protein
Publié par Ludo à 06:44 0 commentaires
Libellés : molecular graphism;icm;shsp;small heat-shock protein;kerkythea;modeling;docking
samedi 7 juin 2008
Pushing the Boundaries of Biomolecular Simulation
I am really happy to show the poster that I will present during the Pushing the Boundaries of Biomolecular Simulation meeting (http://web.mac.com/laveryr/ISQBP08/Welcome.html). Many important people from the molecular modeling fields will be present and I hope they will enjoy my litlle poster...
mardi 27 mai 2008
Proteins Blocks
A litle attempt to get nices pictures illustrating proteins blocks. You can find more details on the web site of Alexandre De Brevern.
Publié par Ludo à 07:42 1 commentaires
Libellés : 3d logo molecule, 3d protein gelato vmd ambient occlusion composing molecular graphism, atom, peptide, protein blocks, structural alphabet
mardi 29 avril 2008
hand shadow
For me, beautifull results happens accidently.Here is an exemple of hasard. Thats fun this face appearing in the background, like hand shadow coming from the "Nightmare Before christmas" movie.
Publié par Ludo à 14:20 0 commentaires
Libellés : modelisation;molecule;atome, protein;3d;hand shadow;blender;modeling
jeudi 24 avril 2008
Nice video that i have found on a friends web site (volta.fr):
"The video was created by me (Michael Wesch), working alone from my house in St. George, Kansas. I used CamStudio for the screen captures and Sony Vegas for the panning/cropping/zooming animations. Someday I might make a video tutorial for those who are interested."
Publié par Ludo à 09:32 0 commentaires
Libellés : web2.0
mardi 22 avril 2008
Protein-Protein Interaction Website
The most relevant place to find information about protein-protein is the JBC Protein-Protein Interaction Website : http://www.imb-jena.de/jcb/ppi/
You should find all the litterature, software, database, company, meeting, course, tutorial etc...about protein-protein interaction. Put it on your favorites if it is not the case!
Publié par Ludo à 00:11 1 commentaires
Libellés : protein;docking;interaction;molecule
vendredi 18 avril 2008
bezier curve for protein ruban

Thats dones! I am quite happy to finally get a nice protein worm representation directly in blender. But there is still the coloring method problem...I have to associate vertex with material according physical property...And try to display arrow and helix for secondary structure type...
(thanks to the blender tutorial here :http://jmsoler.free.fr/didacticiel/blender/tutor/cpl_celticknot.htm and the API help)
Publié par Ludo à 05:49 0 commentaires
Libellés : atom;molecule;api python;nurb;circle, bezier curve, blender, protein;3d;graphism

